Summary for Consensus NMF

Summary for Consensus NMF

Usage

# S3 method for class 'consensus_nmf'
summary(object, ...)

Arguments

object

consensus_nmf object

...

additional arguments (unused)

Value

Invisibly returns the consensus_nmf object. Summary statistics are printed to the console.

See also

consensus_nmf, plot.consensus_nmf

Examples

# \donttest{
library(Matrix)
A <- rsparsematrix(50, 30, 0.3)
cons <- consensus_nmf(A, k = 3, reps = 5, seed = 42)
summary(cons)
#> Consensus NMF Results
#> =====================
#> Rank (k): 3 
#> Replicates: 5 
#> Samples: 50 
#> Cophenetic correlation: 0.8538 
#> 
#> Cluster sizes:
#> 
#>  1  2  3 
#> 21 14 15 
#> 
#> Consensus summary:
#>   Min: 0 
#>   Median: 0.4 
#>   Mean: 0.332 
#>   Max: 1 
# }